An internal biomérieux investigation was performed with results as follows: based on the data provided by local customer service (lcs) it is only possible to give the status of the system for the last identification result, performed on (b)(6) 2016: the system was not operational.Regarding the analysis of the data provided by lcs, the most probable identification is burkholderia pseudomallei.For information: burkholderia pseudomallei et mallei are part of the v3.3 package through a partnership with a laboratory p3.The suspected root cause of the issue is the system not being operational.There is a system limitation: b.Pseudomallei is not present in any of the vitek® ms knowledge bases (kb).Vitek® ms system identification is based on a species pattern classification.This system limitation is due to the use of a predictive modeling based on a supervised learning.Typically, such a model includes an algorithm that learns certain properties (e.G., presence of peaks) from a training spectra dataset in order to make those predictions.When the microorganism tested is not part of the training dataset, no specific species pattern will be available in the database for comparison.Consequently, the system can give: no identification (no-id) (most probable answer) when the spectrum acquired does not match with any species pattern.An incorrect single choice identification to the nearest species pattern (often same genus as expected) when the spectrum acquired presents a high level of similarity with a specific species pattern present in the database.An incorrect low discrimination identification (often the same genus as expected) when the spectrum acquired presents a high level of similarity with multiple specific species patterns present in the database.This system limitation is mentioned in the following vitek® ms knowledge base (kb) user manuals: kb v2.0 clinical us: manual ref (b)(4), page 1-11 "testing of non-clinically validated species or species not found in the database may result in an unidentified result or a misidentification." kb v3.0 clinical ex-us: manual ref (b)(4) currently available only in english since 25-jan-2017 as: "testing of non-clinically validated species or species not found in the database may result in an unidentified result or a misidentification." recommended actions to the customer: perform a fine tuning.Install vilink in order to monitor the status of the instrument.Update the system to kb v3.3 whether as available.B.Pseudomallei, it should not be retested on the instrument after fine-tuning occurs.As reminder: according user manual ref (b)(4) (kb v2.0 clinical-exus) / ref (b)(4) (kb v3.0 clinical-exus): highly pathogenic organism: select agent (usa) - handle isolate with extreme caution and send to a reference laboratory for identification confirmation following your laboratory's select agent protocol.
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